PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83860

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 511aa MW: 58629.6 Da PI: 5.3136

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83860	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.8	2.4e-25	172	263	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y++ +GFsvrk +s++ k+++e ++++f C+k g r ++ +k ++++++++a+trtgC a+++v+++k +gkwev+ +e +HnH+la OMO83860 172 KFYRTYGHIIGFSVRKGSSRRDKKTNELVMKEFSCNKAGWRMDKWNKlENRKKEPKAVTRTGCVAHMRVRLNKrTGKWEVSWFEGQHNHDLA 263 6**************************************9998886788999***************9**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MSSLDLNDDP CLVASEAISD DQVKNVGESE APVDGCVQRL EGRAEVQDVE EMGERTDFPL 60 QPVERVAEDD VQNTGIPHIS ESTASDEDEN EEVMKNTSTD DVHVDADDEL MEEAANQADD 120 EMDQEASRVP RVNFDDTYAA DPCRYFLDKD PSEMNKCYME GLEFNSCDDA FKFYRTYGHI 180 IGFSVRKGSS RRDKKTNELV MKEFSCNKAG WRMDKWNKLE NRKKEPKAVT RTGCVAHMRV 240 RLNKRTGKWE VSWFEGQHNH DLAKRKQRHL LRSNRQVTEG SIQFARAWRR TGARPCQIMS 300 YLATEAGGFQ SVGFTRKDLS NRLYIRGRNS VEAGNIHTAI TYLETKANSD PGFYVSYAVD 360 KDNTFERAFW SDSISRADYP FFSDVIAFDT TYKKNGLNLP LLVFVGVNHH HQTIIFAFAL 420 LTVENEEAFV WSLEEFLKCM SNRETILING EYFQLTHFVK LARDHLEMYQ RMPSYRPPVR 480 FVACHGVSLH LLFYCSRASL DLLSSVTRLQ S

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MSSLDLNDDP CLVASEAISD DQVKNVGESE APVDGCVQRL EGRAEVQDVE EMGERTDFPL  60
QPVERVAEDD VQNTGIPHIS ESTASDEDEN EEVMKNTSTD DVHVDADDEL MEEAANQADD  120
EMDQEASRVP RVNFDDTYAA DPCRYFLDKD PSEMNKCYME GLEFNSCDDA FKFYRTYGHI  180
IGFSVRKGSS RRDKKTNELV MKEFSCNKAG WRMDKWNKLE NRKKEPKAVT RTGCVAHMRV  240
RLNKRTGKWE VSWFEGQHNH DLAKRKQRHL LRSNRQVTEG SIQFARAWRR TGARPCQIMS  300
YLATEAGGFQ SVGFTRKDLS NRLYIRGRNS VEAGNIHTAI TYLETKANSD PGFYVSYAVD  360
KDNTFERAFW SDSISRADYP FFSDVIAFDT TYKKNGLNLP LLVFVGVNHH HQTIIFAFAL  420
LTVENEEAFV WSLEEFLKCM SNRETILING EYFQLTHFVK LARDHLEMYQ RMPSYRPPVR  480
FVACHGVSLH LLFYCSRASL DLLSSVTRLQ S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	227	RRDKKTNELVMKEFSCNKAGWRMDKWNKLENRKKEPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-51	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO83860