PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83890

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 460aa MW: 51002.3 Da PI: 4.6969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83890	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	116	137	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+Cg+ F++ L Hir H OMO83890 116 SCPYCGQGFKSGKALGGHIRIH 137 6*******************99 PP
2	zf-C2H2	14.5	0.0001	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+ F++k +L H+++H OMO83890 153 HVCDICNVNFPSKQSLCGHMKSH 175 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MAMEIDRDED EFSRKTSGET ENGNQGTVDG DDDFDHGSSS SSTSSSSYFL DGKSSNTKSS 60 ASSSCFLDGK TKKKSPCSSS PSFVDGKTKT QTLKLLDLGQ KNTNVLEDQE GEFGRSCPYC 120 GQGFKSGKAL GGHIRIHKVK VAKQIADQKD NNHVCDICNV NFPSKQSLCG HMKSHPGRTS 180 KGIQPPKQTT LPKPEPEPEP ESESEPELEP EFEFPVQNLV DFISNWTVTG RRGRKATISA 240 EKLRMIEQVV EKKRKIEVED EEDGNQLHQA KFQRVELMEK EISEEEAVMQ VIKPEPELEE 300 GEILDDQDLP EEGEIIEDHE LDNDNGSNNN TIISHEDLLI TNSYSTLQAL DGSERDELGL 360 FDNKKMKKRE EAAYKPAGSM VRTSKKTAGQ HYGNTVSNHK KSCLGMSDDD EEIDFQVEPA 420 GKNGSFNHKA SLSLKANQAA AGTMKKKMLD LDLNLLPYEE

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MAMEIDRDED EFSRKTSGET ENGNQGTVDG DDDFDHGSSS SSTSSSSYFL DGKSSNTKSS  60
ASSSCFLDGK TKKKSPCSSS PSFVDGKTKT QTLKLLDLGQ KNTNVLEDQE GEFGRSCPYC  120
GQGFKSGKAL GGHIRIHKVK VAKQIADQKD NNHVCDICNV NFPSKQSLCG HMKSHPGRTS  180
KGIQPPKQTT LPKPEPEPEP ESESEPELEP EFEFPVQNLV DFISNWTVTG RRGRKATISA  240
EKLRMIEQVV EKKRKIEVED EEDGNQLHQA KFQRVELMEK EISEEEAVMQ VIKPEPELEE  300
GEILDDQDLP EEGEIIEDHE LDNDNGSNNN TIISHEDLLI TNSYSTLQAL DGSERDELGL  360
FDNKKMKKRE EAAYKPAGSM VRTSKKTAGQ HYGNTVSNHK KSCLGMSDDD EEIDFQVEPA  420
GKNGSFNHKA SLSLKANQAA AGTMKKKMLD LDLNLLPYEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-09	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO83890