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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO84103 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 246aa MW: 26653.9 Da PI: 4.5373 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 179.2 | 3.8e-56 | 45 | 149 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivpr
OMO84103 45 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 145
89*****998899**************************************************************************************** PP
NF-YC 99 delk 102
de+k
OMO84103 146 DEIK 149
*975 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 246 aa Download sequence |
MDANQQAQSS SYPPQPPTAS AITPTPSSAT APPAFHHLLQ QQQQQLQMFW SYQRQEIEQV 60 NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PILFAKACEL FILELTIRSW LHAEENKRRT 120 LQKNDIAAAI TRTDIFDFLV DIVPRDEIKD EPGLAGMVGA TASGVPYFYP PMGQPAGGPA 180 GPGGMMIGRP AVDPTGVYVQ PPSQAWQSVW QTAGAEDGSY ASGGSSGQGN LDGQGDGCDD 240 ITYVPL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 118 | 124 | RRTLQKN |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G48590.1 | 6e-90 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO84103 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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