PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84262

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 422aa MW: 46965.4 Da PI: 6.5251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84262	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	167	188	23	45
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W+ Ia+ ++ gRt++ +k++w+ OMO84262 167 RWAEIAKFIP-GRTENAIKNHWN 188 8*******.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MEDVQGRSGG FGSYGNLLCR SSLYKPSPPL SAIDRFLWGQ TQSRSSQQYS TQRNVETKSN 60 PPSFSTDQPL LRGFYLSTND GIGIGGYLSG VSSSWQTKLE EISFVDGLLL DGENLALTDE 120 KNPNINMEMK QVKATVKNFS NKGVGKRIKK VVSTALIKGQ WTDDEDRWAE IAKFIPGRTE 180 NAIKNHWNAT KRRQNSRKKN KQQNNNDKNQ NGSKLPQSSI LQDYIRSCQN LNNSSSSNHR 240 SNAANSSTAS ASSSTTFSED LSLSSSQFKY FLPDQPSSES DHNSDHQPLI TQTYDEELLF 300 MQNFFGNDNN NNVHQLDQPR VDNLSNGVQK CSNPADHGTG FFSSSIINSC VEEEEEEQPR 360 TGYLFSDLYL SRLLNGSPAT TGSSAFSTGY SYTNMKAEQA SSQGRKEMDL FEMVSSSQFF 420 GR

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MEDVQGRSGG FGSYGNLLCR SSLYKPSPPL SAIDRFLWGQ TQSRSSQQYS TQRNVETKSN  60
PPSFSTDQPL LRGFYLSTND GIGIGGYLSG VSSSWQTKLE EISFVDGLLL DGENLALTDE  120
KNPNINMEMK QVKATVKNFS NKGVGKRIKK VVSTALIKGQ WTDDEDRWAE IAKFIPGRTE  180
NAIKNHWNAT KRRQNSRKKN KQQNNNDKNQ NGSKLPQSSI LQDYIRSCQN LNNSSSSNHR  240
SNAANSSTAS ASSSTTFSED LSLSSSQFKY FLPDQPSSES DHNSDHQPLI TQTYDEELLF  300
MQNFFGNDNN NNVHQLDQPR VDNLSNGVQK CSNPADHGTG FFSSSIINSC VEEEEEEQPR  360
TGYLFSDLYL SRLLNGSPAT TGSSAFSTGY SYTNMKAEQA SSQGRKEMDL FEMVSSSQFF  420
GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-11	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO84262