PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84278
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 296aa    MW: 33314.2 Da    PI: 9.3097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84278genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+ E + + +a + + ++   +W ++a++++ g+t ++++  ++ 
         OMO84278 28 KWTPAENKMFENALAVYDKDtpdRWQKVAAMIP-GKTVEDVIKQYRE 73
                     8********************************.*******999986 PP
2Myb_DNA-binding48.22.4e-15133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
         OMO84278 133 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 177
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MKWEMEILSP TSYLPSTNWF LEESNCTKWT PAENKMFENA LAVYDKDTPD RWQKVAAMIP  60
GKTVEDVIKQ YRELEADVSS IEAGLFPAPG YSTSPFTLDW GNGHGYDGLK QSYGLGGKRS  120
GRPAEQERKK GVPWTEEEHK LFLMGLKKYG KGDWRNISRN FVVTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR ASIHDITTVN LNDTRTPSPD NKGTSSPDQS SLLSQQPNSG AMSRTHFQWN  240
QPSMAFNSTQ GNMLMSSPYG VPSYGLKIQG QNAHESYFGP QNLVFQMQSA QQYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-107MYB_related family protein