PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84387
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GeBP
Protein Properties Length: 227aa    MW: 25606.5 Da    PI: 10.4842
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84387genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57364.91.9e-2012103298
    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
               +f+r++se+Dei +L+ li+ +++  +  +    ++++ + ++++ k+++sq+  Kir+LK K++k+ k      +  ++++hd+k+f+lsk+iWg+
  OMO84387  12 QFSRVFSESDEIQILKSLIKATKSLPSPITTIAAEIVDRIAERLNYKFTSSQINGKIRKLKTKYHKHAKS-----KSLVRTHHDRKVFKLSKRIWGK 103
               699*****************9777775555577889*******************************999.....6678999*************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
METPPPRSPN GQFSRVFSES DEIQILKSLI KATKSLPSPI TTIAAEIVDR IAERLNYKFT  60
SSQINGKIRK LKTKYHKHAK SKSLVRTHHD RKVFKLSKRI WGKKTAPKKK NETQGGEIGN  120
GKADDDGVGN LGKFPVAAQN EESRVVDGVG NLEKFPYLVA EFSRVLPENE VWKERMNGFD  180
EKKLRKMDQE WVALKVEEAK LVAKKAELMQ QQIMMIMGEA GSTNGLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-09GeBP family protein