PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84396

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 311aa MW: 33215.8 Da PI: 7.3717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84396	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H OMO84396 126 YECKTCNRSFPSFQALGGHRASH 148 99**********99999998887 PP
2	zf-C2H2	13.1	0.00029	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OMO84396 205 HECSICGSEFNSGQALGGHMRRH 227 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MQAQEEFVGS NDHQALIMKR KRTKRQRSSS PFGLAVTSSS SSACGGGGGG GGGGVAEEFN 60 SISSPTTSSG EIYESTEEDE DMANCLIMLA QSDGPKRIHK NIEKFNTTRK FSEIATTTNK 120 AGFYVYECKT CNRSFPSFQA LGGHRASHKK PKAAAAMGED KKPLGLAVKD DDEEGQNRES 180 PVLALQVSNN KVNSHGNNNK GSKIHECSIC GSEFNSGQAL GGHMRRHRAA AAAAAAAATN 240 IQAAMSADTT STTNDSSSDH IHHEIKHRNI LSLDLNLPAP EDDLRDSKFQ FGGIPKQALV 300 FSTPALVDCH Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	25	MKRKRTKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-56	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO84396