PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84725

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 193aa MW: 21628.4 Da PI: 7.0434

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84725	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.8	1.4e-16	97	156	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + +t+t+ ql++L lF + ps+++++e++++l +++e+++++WFqNrRa+ k+ OMO84725 97 QQWTPTPVQLQILVGLFDQgIGIPSKQKIKEITSELsqhgQISETNIYNWFQNRRARSKR 156 579*************99************************************97 PP
2	Wus_type_Homeobox	92.2	4.8e-30	95	158	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a++ WtPtp Q++iL l+++G+ P+k++i++it+eL+++G+i+++N+++WFQNr+aR+++kq OMO84725 95 ATQQWTPTPVQLQILVGLFDQGIGIPSKQKIKEITSELSQHGQISETNIYNWFQNRRARSKRKQ 158 6789**********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MASRPRFPLV EIDLNSFQRD EEQIVKEHPR LPDLNTNVEE DVFELNFPLA DRPSPTQPLI 60 DLNEGPPKHA NSSGGRLRNL YCDPLMTSTG HKITATQQWT PTPVQLQILV GLFDQGIGIP 120 SKQKIKEITS ELSQHGQISE TNIYNWFQNR RARSKRKQLA ASSNNADNPG LDLHPCPALP 180 VTTAYVCPSA RIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-45	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO84725