PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84833
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 310aa    MW: 34990.9 Da    PI: 8.4031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84833genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.5e-343510954128
       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++++++g++ktLvfy+grap+g+ktdW+mheyrl
  OMO84833  35 PQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLSNSKKIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 109
               457**********************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MSESVSFSIF HPLLQKIPSG CSKLFSDKCR IGSGPQNEWY FFSHKDKKYP TGTRTNRATT  60
AGFWKATGRD KAIHLSNSKK IGMRKTLVFY TGRAPHGQKT DWIMHEYRLD DDDSDVQEDG  120
WVVCRVFKKK SHNRGNFQAD YSHQEENFTH IKNNTSNLAS SAHQMEPRHN HLQALYDYNS  180
SFDGSMHLPQ LFCPESAAAA AAAAASSFLS PVSNLNSIDL ECSQNLLRLT SSAAGGGGLM  240
QQERFNGEWS FLDKLLATSH HHHHHGLDQQ QHTQSNSKMD HHHHHVGTST QKFPFQYLGC  300
EAADILKFSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132KKKSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.13e-77NAC family protein