PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84997
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 174aa    MW: 19265.7 Da    PI: 9.2474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84997genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-094686954
              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r RR+ri ++f  L++++P       +K++ +++L +A++Y+k L
  OMO84997 46 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIQYVKFL 86
              699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MDYFPSSFIG SSSNSSSKEK KKAAGGKKST SKGAVKLSTD PQSVAARERR HRISDRFKIL  60
QSMVPGGTKM DTVSMLDEAI QYVKFLKTQI WLHQAMINFV DDDSATAASL YLPGSNYSYP  120
VLQGNIVYSS SSNSTNVNPH ALQQYSELLP LPDSCCFQGD QKPNMPYDVY MKNQ