PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85381

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MIKC_MADS

Protein Properties

Length: 208aa MW: 24085.3 Da PI: 5.9862

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85381	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.8	5.2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskR+ng++KKA EL vLCd+e a++ifs++gkly +ss OMO85381 9 KRIEDKSSRQVTFSKRKNGLIKKARELAVLCDVELALVIFSPRGKLYQFSS 59 79***********************************************96 PP
2	K-box	49.7	1.6e-17	86	172	13	99
K-box 13 kaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +a++++ e++ L + ++ Lq Rh+ G+d+++L++ +L +Le+qL++ l++ R++K++l+++ ++ l +ke++l++e++ +++k++ OMO85381 86 EAAKSRDEHSDLWRATS-LQeMVERHIEGQDIQQLNMTQLINLEKQLDSILRQTRNRKTQLMMDTVDALHEKENQLKQEKNVMENKIA 172 45566667777765555.554889*********************************************************9999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MGRGKVELKR IEDKSSRQVT FSKRKNGLIK KARELAVLCD VELALVIFSP RGKLYQFSSG 60 ESLRKILERY QIHVDEEAAI YNSVHEAAKS RDEHSDLWRA TSLQEMVERH IEGQDIQQLN 120 MTQLINLEKQ LDSILRQTRN RKTQLMMDTV DALHEKENQL KQEKNVMENK IAAEMQVEDG 180 EKDDELNQED PHSDSNQTPL GKGLLQFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-43	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO85381