PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85392

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 242aa MW: 27468 Da PI: 9.5544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85392	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	95	117	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H OMO85392 95 SCSVCSRVYPTSRLLSIHVSEaH 117 6*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MAMAVDYNHD SSFPYWSSTR RRFDPDSPFF SSGNIERELL AKQVALDLTE DERSQLEKMV 60 AKDARGVFCP IAGCGARLSS LENFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF 120 FQAKVARGYA MYECLVEGCG LKFKSYKGRQ QHLVDKHKFP TSFEFFKKAN PSKKQRQKNQ 180 RKQAIHKKDE EASSKMEVES ETMDGLVSAV SKLTTSDSSP STISFGRRHT RGLTFVPRSV 240 QR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	179	KKQRQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-120	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO85392