PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85412
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family SBP
Protein Properties Length: 69aa    MW: 7953.08 Da    PI: 10.2779
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85412genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP544.5e-172369247
              -SST.T-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS
       SBP  2 Cqve.gCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47
              C v+ g ++d+ + ++yh rh+vC++hsk p v+v+g+e rfCqqCs
  OMO85412 23 CLVDdGYKSDFGKFRKYHMRHRVCKHHSKDPLVIVEGKELRFCQQCS 69
              777525789*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    
SSGSGSFKRS NSLSSRNQKL MSCLVDDGYK SDFGKFRKYH MRHRVCKHHS KDPLVIVEGK  60
ELRFCQQCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-14SBP family protein