PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85421

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 417aa MW: 45721.5 Da PI: 8.255

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85421	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.4	6e-39	67	151	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a+ s+s+++ s OMO85421 67 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGGSVSQQG-AS 151 789******************************************************************99854444444443.22 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDPKGSKQQP PQEVANFLSL PPQPQHPQPP QQQPPPPQNM SENKPAEIKD FQIVVADNKE 60 EGKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA 120 EPSIIAATGS GTIPASALAA AGGSVSQQGA SLSAGLHQKM EDLGPGGSSI GSGSSRTSWA 180 MVGGNLGRPH HMATGLWPPV SGYGFQSSSS GPSTTNLGTE SSNYLQKIGF PGFDLPAANM 240 GQMSFTSILG GASHQQLPGL ELGLSQDGHI GVLNPQALSQ IYQQMGQARM HQQQQQQHHQ 300 HQQQHHQQPP VKDDSQESGQ SEERWILCLS EFYRDWMDFV LPPSSFCTES PKSPLQRWSF 360 AQPRFLGTSC LIKRCVDYDV RKIFIVFFFS RTLDGVEIGL FVKLNIEFYG HTFPVAS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDPKGSKQQP PQEVANFLSL PPQPQHPQPP QQQPPPPQNM SENKPAEIKD FQIVVADNKE  60
EGKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA  120
EPSIIAATGS GTIPASALAA AGGSVSQQGA SLSAGLHQKM EDLGPGGSSI GSGSSRTSWA  180
MVGGNLGRPH HMATGLWPPV SGYGFQSSSS GPSTTNLGTE SSNYLQKIGF PGFDLPAANM  240
GQMSFTSILG GASHQQLPGL ELGLSQDGHI GVLNPQALSQ IYQQMGQARM HQQQQQQHHQ  300
HQQQHHQQPP VKDDSQESGQ SEERWILCLS EFYRDWMDFV LPPSSFCTES PKSPLQRWSF  360
AQPRFLGTSC LIKRCVDYDV RKIFIVFFFS RTLDGVEIGL FVKLNIEFYG HTFPVAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	9e-79	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO85421