PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85463
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 239aa    MW: 27024.9 Da    PI: 9.5467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85463genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.13.5e-36141381128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lp GfrFhPtdeelvv+yLk+k+   +l++ +vi+e+d++++ePw+Lp  +   +++ yfFs r  +++++k+ + a+ sgyWk  gk+k+v+++ ++++v
  OMO85463  14 LPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPELDVFQAEPWSLPGDL---KDKRYFFSYRYGNESNNKKCKIAAGSGYWKPIGKEKPVMAAgSNQVV 110
               699***************************.99***************554...4578********9999999999******************966778* PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
               g+k+tL+f + ++++ ++++W +h++rl
  OMO85463 111 GMKRTLIFCQRNRSNETNSRWHLHQFRL 138
               *********9999999**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MESQNLVENG GIKLPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPELD VFQAEPWSLP  60
GDLKDKRYFF SYRYGNESNN KKCKIAAGSG YWKPIGKEKP VMAAGSNQVV GMKRTLIFCQ  120
RNRSNETNSR WHLHQFRLVG PLATLYSTQM SKWGLFGEWL VFRVFQKKMK GKKNGAIGNK  180
IQTTIDFTVE DCSAFGPPQP SSPSSSEITE VSNSSNGLDQ EETSANFITC YSNCWVRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-48NAC family protein