PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85556
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 291aa    MW: 31627.6 Da    PI: 7.1664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85556genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-2051100255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa++k++g
  OMO85556  51 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 100
               7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MAATSQHQYL IAQSHDMLPQ QQATPGQQQD HLTPQNQQLP EAQDQGMRKR HYRGVRQRPW  60
GKWAAEIRDP KKAARVWLGT FDTAEAAAAA YDAAALKFKG SKAKLNFPER VQVQAAAFLP  120
SNSTYNNPNI AAAPQHSLPS STNNPQSPCY YSNLLSSHEA FPYLSQYVQL LSDCNDIVDN  180
NYWQYVEPSG VHNYQQPAPA ALISHSPSLM TSSINSSSTT SYSNSSSSAA SAAGYFMSQN  240
HQVVNDEENS APGFISSAAA QIMGSFSSTS HLASLNHAGN KPSDHGSQPK D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-36ERF family protein