PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85600
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 240aa    MW: 26816.3 Da    PI: 4.9271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85600genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191967355
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  OMO85600 19 FLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
              56******.**********933...5*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
METVPCPSKG KKKQTQGRFL GVRRRPWGRY AAEIRDPNTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGPRA RTNFVYSDMP PGSSVTSIVS PDERNSQTQQ HNNINPQLCF SQELDYSNSN  120
QCQFSSMPQQ HVWGSSIDNN MGLLMSYSSE SELPPLPDSY SADNSSVSGS GTEYFMGWEA  180
EDQSRKINSN EFEVPSTANG SFFGFDTSEY VHSPLFSRMP SVSDNVPDGF NLGGSSSYFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11125KKKQTQGRFLGVRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-36ERF family protein