PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85789
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MIKC_MADS
Protein Properties Length: 332aa    MW: 37601 Da    PI: 4.8058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85789genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.3e-28958150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  OMO85789  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
              79********************************************9997 PP
2K-box23.91.7e-091251911379
     K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
               + e+ qqel +L++++++ ++++R +  + L   ++ ++++ e+qL + l k+ ++K+ ll +++++
  OMO85789 125 DIEEIQQELVRLQQQLQMAEEQLRAYEPDPLRLTTMADIESCEKQLVDTLAKVVQRKEYLLSNHLSY 191
               67899*********************************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
TRIEDVFSRY INLPDQEREH ALIFPEQSRH PDIHNREYLL RILQQLRSEN DIALQLANPV  120
SINPDIEEIQ QELVRLQQQL QMAEEQLRAY EPDPLRLTTM ADIESCEKQL VDTLAKVVQR  180
KEYLLSNHLS YNPSPLQALP PSFDNEVVNW QLPDSGQSQS QIFDTSATLN QLRDLSSTVY  240
DPMLQGSMSN PSGDDFQASW SQAYTSAGLQ SSPLQTTLYS HVQHGMVGQE MIKNEEMEIP  300
AGNSSSHGQI QSKAGDNEGS NYETGLAQLN GQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-116MIKC_MADS family protein