PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85924
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 261aa    MW: 28959.4 Da    PI: 5.8177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85924genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-1184136155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               ++ +h e+E++RR+++ + ++ Lr+llP       ++K   ++    A+ YIk+Lq
  OMO85924  84 KKLMHREIEKQRRQEMATLYSSLRTLLPLeY---IKGKRAVSDHMNGAISYIKDLQ 136
               5789*************************77...99*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDDSMFNFHQ QLSYSNFSEN PHQPQDDPTQ QDKILDYVLD HDLHHLPMDI GAGGSGGSSN  60
RGSRRGKLSL GSDKNENNVD DAKKKLMHRE IEKQRRQEMA TLYSSLRTLL PLEYIKGKRA  120
VSDHMNGAIS YIKDLQKRIE VLTAKRDELK KLSNISSGYF DQGGSSSDQS NFPSSAVVSH  180
SVDGVEVVIS TGLGPQALTL SRVLQLLLEE GLDVVSSIST RIDGGLMLHT IQSEVGDMRY  240
VDIARLEQKL NEEISSLSQI S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-44bHLH family protein