PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85944
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 247aa    MW: 27492 Da    PI: 7.0311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85944genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-1075126255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               + + +e+Er+RR+++ +  ++Lr+llP  +    ++K   ++   +Av+YIk+L+
  OMO85944  75 KIMRKEIERQRRQQMANLSAQLRSLLPVeS---IKGKRAVSDHMNEAVNYIKYLR 126
               66789***********************56...9*******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MFPTIYNQND DEFLYEISGI PHYMDFGQQN LTISGQPGIT DSSTSTQKLG KGRRLKKSVP  60
IPNNDGNGET NDAKKIMRKE IERQRRQQMA NLSAQLRSLL PVESIKGKRA VSDHMNEAVN  120
YIKYLRKRIQ ELSVKREKLK KLSGNFDQGT SATSSNSDNN SSSQINCVAI HPYCGGVEIV  180
INSGFGDESS HLSLIMQAII EEGLDVIRCV SSQMSEGFCH TIQSEISDPT LQLDLPGLQS  240
RLNDLIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-37bHLH family protein