PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85961

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27918.7 Da PI: 8.6171

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85961	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2.1e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gk+ e+ OMO85961 9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58 69**********************************************95 PP
2	K-box	93.6	3.2e-31	78	171	6	99
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e + ++l+qe+ kLk+++e+Lqr+qRhllGe+Le+Ls+keL ++e+q++++l++ R+kK++l+++ +eel+kke+el++enk+L+++le OMO85961 78 QVNIPEDEGQTLYQEVLKLKAKYESLQRSQRHLLGEELEPLSVKELYKIEKQVDRALSQARQKKMQLMFDRMEELRKKERELEDENKQLKSQLE 171 445778889*********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGRGKVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKVSEFGSN 60 TNVSETLEKY WQHRYTSQVN IPEDEGQTLY QEVLKLKAKY ESLQRSQRHL LGEELEPLSV 120 KELYKIEKQV DRALSQARQK KMQLMFDRME ELRKKERELE DENKQLKSQL ELEQCFQVAQ 180 GFGDPNIEAS NEYNVAASSQ ANPPQHDSSL AMGYHQFIPQ ERVVEARLEI RGANKRAAGW 240 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	6e-61	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO85961