PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85973

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 318aa MW: 33938.9 Da PI: 6.7243

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85973	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.4	4.4e-37	96	197	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaksaakskksqk 102 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + + +sss+ k++ + ++k++++ OMO85973 96 PKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV--NGTLKIPTSSSSgKQQDGDLPRKRRKR 194 6899**********************************************************9999955531..222222222222122222223333333 PP TCP 103 saa 105 +++ OMO85973 195 PSN 197 332 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MECNQNQTIK EIDESISNNT AIIINGHQQQ QQQSTNTSPS FSPSEGTVMD PNQPMKEEEE 60 DLTDTEAQQF TNPTLHHSLV QLQPGTVTNN RSSFAPKRPS KDRHTKVEGR GRRIRMPATC 120 AARIFQLTRE LGHKSDGETI RWLLEHAEPA IIEATGTGTV PAIAVSVNGT LKIPTSSSSG 180 KQQDGDLPRK RRKRPSNSEF IDINDHPEHQ SSVSSGLAPI APIPYNSVSM NSQGLVPIWP 240 MGTFGVLPAA ATPGGGVGSL GPNQAQLWAF PATATPFFNV AGRPISSFVS ALQPEMQGSV 300 GSVGVLSGSS ISVMGGVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	195	PRKRRKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-78	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO85973