PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85983
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 223aa    MW: 24564.2 Da    PI: 5.813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85983genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.7e-1952102155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  OMO85983  52 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 102
               68*****888.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MMDSGSVSSP ISDSGSASYG RPANFSDEDV MLASSCPKKR AGRKKFRETR HPVYRGVRRR  60
NSGKWVCEVR EPNKKSRIWL GTFPTAEMAA RAHDVAAIAL RGRSACLNFA DSAWRLPVPA  120
STDPKDIQKA AAEAAEAFRP AEHSDGYSGD DAKIRAENTE AEKTTVSENG FYFDEEALFG  180
TQRYFANMAE GMLLSPPRCG YNGADEQEND AADDYVPLWS YSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-79ERF family protein