PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86028

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 219aa MW: 23919.9 Da PI: 8.173

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86028	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.3	1.5e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+e OMO86028 11 PCAACKFLRRKCQPECVFAPYFPPDNPQKFAHVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAKSE 110 7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MNMASSSSNS PCAACKFLRR KCQPECVFAP YFPPDNPQKF AHVHKVFGAS NVTKLLNELH 60 PSQREDAVNS LAYEADMRLR DPVYGCVGVI SLLQHQLRQL QMDLSCAKSE LSKYQSLGIT 120 GHAGLIAAAA AAASTTHQNL GINLIGGAGG GGREHHYQFF PREHHHHHHQ QQMIRSFEAS 180 NSYDGSLLAM NVSAGIGQLS QYQQPRAAAG DDRRTIDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	9e-80	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO86028