PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86174
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family CO-like
Protein Properties Length: 338aa    MW: 37189.5 Da    PI: 6.3445
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86174genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.66.1e-09436436
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
              + C+ +++  ++lfC+ ++ +lC +C +++H  
  OMO86174  4 KLCDSCKSATATLFCRADSAFLCSSCDSKIHAA 36
              68*****************************54 PP
2zf-B_box27.75.4e-094691342
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  OMO86174 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
              689*****************************66899999*99986 PP
3CCT69.49.5e-24273316144
       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
               Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  OMO86174 273 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 316
               9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MASKLCDSCK SATATLFCRA DSAFLCSSCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVNS VPPVKPNGAV NFLDERYFSD  120
ADAEADVSRE EAEAASWLLP NPNHKAVESP DVNTGQYVFS EMDPYLDLDY GPVDPKMEAQ  180
EQNSSGTDGV VPVQSKNVQA PMVSDHCFDL DFTGSKPFAY GYNPHCLSHS VSSSSLDVGV  240
VPDGSAMTDI SNPYGRGGSE STHQTVQLSS ADREARVLRY REKRKNRKFE KTIRYASRKA  300
YAEMRPRIKG RFAKRTDIEV EVDVDRSNVF GFGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-151CO-like family protein