PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86285
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 211aa    MW: 23701.3 Da    PI: 12.0046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86285genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.1e-05138179854
               HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               rE+r    +  ++ +L +l+P +     +Kls + iLe++ +YI  L
  OMO86285 138 REKRKLPAVERKLKTLGRLVPGC-----RKLSFSNILEETSDYIAAL 179
               67777778889999*******99.....8***************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MASFLPNLDP GPDTSPEFKR KKRRKTDQTP SSFDRNQATQ RIKRWRTERE QQIYSTKLIE  60
ALRRSRSRTS SSSSSSAPGK QVRETADRVL AFSARGTTRW SRAILAARLG GGATLLRKHK  120
KAKVAANRRL RKPEMINREK RKLPAVERKL KTLGRLVPGC RKLSFSNILE ETSDYIAALE  180
MQVRAMTALT ELLAGGSVQP PADRLASNVN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KRKKRRK
22125KKRRK
3128143RRLRKPEMINREKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.29e-29bHLH family protein