PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86397

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 186aa MW: 21610.4 Da PI: 10.2217

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86397	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.7e-06	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H OMO86397 22 FSCKYCNKKFSNSQALGGHQNAH 44 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MESGNKEKRL KVEQRQQQKK EFSCKYCNKK FSNSQALGGH QNAHKRERAI GKIEKGMMDF 60 YHQPRFPNDL PRVNMGMGAL THEAAYNYSP GYLYNGHGWY PNFLGSKAAM PQSDQLSYWN 120 PNNGLCLSQQ GTTPFPFNSP PISIQFQSLS FKYFSGKEQW VKIKHRWNSR NWYMLSVLST 180 GINFHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	2e-11	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO86397