PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86701
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 207aa    MW: 22778.7 Da    PI: 4.8345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86701genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-191666155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              s y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a++ ++g
  OMO86701 16 SNYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAALHFRG 66
              57*******9.**********8...557***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MEHEVDDFHA RATMTSNYRG VRQRKWGKWV SEIREPGKKT RIWLGSYETA EMAAAAYDVA  60
ALHFRGRAAR INFPELVESL PRPASSSAED VQMAAQEAAL MLRRRPKMMS SEVGAAGGAA  120
AGGGGGGGDG RSLGPIRVGL SPSQIQAINE FPLDSPKMWM ELAGALLMAE QPMEMVDDNI  180
NDAEFISHEY EDHMMQVDSI WDSYPSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LRRRPKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-49ERF family protein