PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86728
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 353aa    MW: 40784.8 Da    PI: 6.6489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86728genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS75.59.6e-2488303106324
      GRAS 106 vegeervHiiDfdi....sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe.fnvlvakrledl...eleeLrvkp 198
               +eg++++H iDf +    s+ +  p L+++L +  +++ s+R+ +v +p  +++   ++ ++ La+ Ae+  ++++ f++++a+ l ++    +++L +k+
  OMO86728  88 LEGKKQLHLIDFYLphlySHHFYGPYLFDTLRKVCGDSISVRVSVVLPPFMEKTVDFRREEQFLAREAEKESIKLKdFKMVYANGLGEVddaFMWDLMMKR 188
               7999********97332234445589*******99*************9999***********************66****99966665222699999998 PP

      GRAS 199 ....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                   +Eal++  + +lhrl++e+++le      L ++ +++P+vv ++e +a+hn ++F +r+ +++ yy +    +  +       ++++     +rei 
  OMO86728 189 raddDEALVIFYSNKLHRLVAEEGALET----ELLTLAQINPDVVFISEDNANHNYSNFIQRLDHSFPYYFSTNPVIGIE-------AQNM----KRREIG 274
               9999**********************99....6667899*******************************8765555444.......3333....456*** PP

      GRAS 296 nvvacegaerrerhetlekWrerleeaGF 324
               n+v ceg++ +erh t+ +Wr+ + + GF
  OMO86728 275 NIVGCEGKDLVERHLTFDQWRSLFLSTGF 303
               ****************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MYDLIDVSAF KKLLLDCATA LQDGNLKLAD VHLGMISNLL AKKTDIARSR LVKYYAEGIV  60
RRAYGLHPSL PFFTSRLPYF DKIEPNVLEG KKQLHLIDFY LPHLYSHHFY GPYLFDTLRK  120
VCGDSISVRV SVVLPPFMEK TVDFRREEQF LAREAEKESI KLKDFKMVYA NGLGEVDDAF  180
MWDLMMKRRA DDDEALVIFY SNKLHRLVAE EGALETELLT LAQINPDVVF ISEDNANHNY  240
SNFIQRLDHS FPYYFSTNPV IGIEAQNMKR REIGNIVGCE GKDLVERHLT FDQWRSLFLS  300
TGFMIPIPLY VKGYNGKENG CLVYRDEFHS AWKFCSGVHL DSTSFNSLLR GWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-26GRAS family protein