PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86911
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 232aa    MW: 26154.4 Da    PI: 10.7857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86911genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.2e-12109150351
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  OMO86911 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
               79**98..47*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVSLRRRKLL GLCSGRSSFL TPLPRFFDNG NAPGNSNQNA KSVSVHPMPS DAISHIHGKS  60
TAKVGSGSQN VSGSGSSKEH HNQPFPGQPI KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKQELRK FKWDEFLAYT  180
RRSITNKKYK RRLGTGQQKR SEPTIESSDW DSKQGVNSLS ASEELGPDSS AS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-50ERF family protein