PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86914

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 434aa MW: 49496.9 Da PI: 5.5243

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86914	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.1e-36	8	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 +GfrF+Ptdeel+ +yL+ ++ +++ + +vi+ v di+ ++Pw+Lp + ++++++ wyf + ky+++kr +r+t +gyWk tg+ ++++++ + + OMO86914 8 KGFRFRPTDEELI-QYLQDQTFDRDSLV-QVIALVqDINLFDPWQLPgRsILQTGDNLWYFMYHPTYKYRNSKRISRTTPHGYWKPTGNARKIINShTAHP 106 7**********.9*99999666.8899888*******6346778999********************************99856677 PP NAM 100 vglkktLvfykg..rapkgektdWvmheyrl 128 +g+kktLvfykg ++++ +kt Wvmhey+l OMO86914 107 IGTKKTLVFYKGhfSDKDKNKTCWVMHEYQL 137 ******9866677889*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
LVMKKNIKGF RFRPTDEELI QYLQDQTFDR DSLVQVIALV QDINLFDPWQ LPGRSILQTG 60 DNLWYFMYHP TYKYRNSKRI SRTTPHGYWK PTGNARKIIN SHTAHPIGTK KTLVFYKGHF 120 SDKDKNKTCW VMHEYQLIIP PAHLAASVSH QKIFNLCKLK RKIDISSCEA GQSSQHALSN 180 LENHNAIPEN LVDPNTSSEP EASNDCSGFL SQSSSIQTYA RERSNQHNMV KEGEGSNISF 240 NSINHVAEDS IPQDLLHLED HNLYSKFEQD NESCNSILTN DDESPLTERS NQHNIVVAAE 300 GFKMPSSLEL EYLGHEDLIP SDLLYNDGLS LDELLAESEA TNNFNWIQNQ FVTRAEDGEF 360 LNSVTANTNE AYLQEGSNQH YLAADNGSGL PCIGMMETSN PMEKSRKRPR LEYDELNHHG 420 QTKEGQPWGK EYPF

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

LVMKKNIKGF RFRPTDEELI QYLQDQTFDR DSLVQVIALV QDINLFDPWQ LPGRSILQTG  60
DNLWYFMYHP TYKYRNSKRI SRTTPHGYWK PTGNARKIIN SHTAHPIGTK KTLVFYKGHF  120
SDKDKNKTCW VMHEYQLIIP PAHLAASVSH QKIFNLCKLK RKIDISSCEA GQSSQHALSN  180
LENHNAIPEN LVDPNTSSEP EASNDCSGFL SQSSSIQTYA RERSNQHNMV KEGEGSNISF  240
NSINHVAEDS IPQDLLHLED HNLYSKFEQD NESCNSILTN DDESPLTERS NQHNIVVAAE  300
GFKMPSSLEL EYLGHEDLIP SDLLYNDGLS LDELLAESEA TNNFNWIQNQ FVTRAEDGEF  360
LNSVTANTNE AYLQEGSNQH YLAADNGSGL PCIGMMETSN PMEKSRKRPR LEYDELNHHG  420
QTKEGQPWGK EYPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	4e-30	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO86914