PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86976
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 378aa    MW: 41960.7 Da    PI: 9.2381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86976genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.2e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
         OMO86976  57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MVSKNPNPAE GFYLDPTGMA LPGLGPFATT ATAASTVSSS EDPSKKIRKP YTITKSRESW  60
TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKSGT SEHLPPPRPK  120
RKAAHPYPQK ASKNAQVQHP QSASFQSSAA LLDTGYVLRS EPSSMLMNPI PNTAASSWTN  180
NAPQTISFSQ AGKGPATANN SCSSTESTPK TRQIGEMTDQ GNHGHALRVL PDFAQVYSFI  240
GSVFDPKASG HLQKLKKMDP IDVETVLLLM RNLSINLTSP DFEDHLFTHH LVQRLVFLFI  300
WLEGCFLPMR LAQRQLIMVV FVKLLTLNGP SAANFQNNFP HTALMYIFQE NLKGEESAEW  360
KEEESQSAVF VHTAAAFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-113MYB_related family protein