PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87406

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

E2F/DP

Protein Properties

Length: 1040aa MW: 116335 Da PI: 5.873

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87406	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.4	3.7e-26	513	578	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+ ++++g+++ln+ a+ L +v ++RRiYDi+NVLe+++liek++kn+irwkg OMO87406 513 RYDSSLGLLTKKFVNLIMEAKDGTLDLNHTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 578 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence
MSESKPQSDP VQNPRVTWEG CSVLLDINDG DRLVFARLSA GATLKIGNKT CSLQPLIGCP 60 FGSMFQVESG QEKPYLSRFT PSTEENNVQD EGKQESRDNR ALIDNNQAQS LTSEDIDALR 120 RQGATGNEIV EALIANSTTF DKKTQFSQEK YRIKKQKKYA PRVLLRRPFS RSICEAYFKK 180 YPARIGFLRV DALSLLLSMA NVTANSDVLV VDWVGGLLTG AVAERLGGTG SVCNTYLGGK 240 PHSMEIIRMF NFTNEICKRI LRCSLDDLCS VQSGTDEKAD QQETVRTVEI RSTEQTSVSV 300 SMEEVDLSTD NGVGDLLPEN DLSTVSKTCK APKAGDKASK ESMKLWRENG FSSLIIAAPE 360 QDPWSLVKHL LPLLSYSAPF AIYHQYLQLT NQNQNQNQPL SYGKPLFPAY LARQPLLFSS 420 FDHSNSSLDS AHSAFATPPL NQTREVKSVE AQTSGRQDVT GHGKVINHPL PGSEHEKGGK 480 HNSKAKGKKN AKSGTQKLDA DSPNGLNTTG NCRYDSSLGL LTKKFVNLIM EAKDGTLDLN 540 HTAEVLEVQK RRIYDITNVL EGIGLIEKTS KNHIRWKGSD DKALELDDQV TRLKAEVQRL 600 YVEECKLDNH IRERQESLRA LDEDVNYQKY LFMTEEDIMN LPCFQNQTVI SIKAPQASYI 660 EVPDPDKDIV FQQRQYKMII RSHNGPIDLR LLSEYQDNVK GLSGGSPELC SDEKASQMNS 720 SKIQLTPTMG DMEPEAGQPK QERSRTRWTP SLDKIFADLV VKQIQLGNRP NNVFDKKTWN 780 NIRDEFNRQT ELNFNNNQLR KHLDVLRTRF YNLKSAYDQN DFAGMEDSCC IGFDLWEDIG 840 AQPRPEPVKV KDCPIYEQLC TIFTDSSADG KYAQSSHFEG LDKAVGNDNG GLNSCPEGGS 900 AQPDNSSASR LPQNNSLPEQ LTKTTGERKR KRPSEAQSSL DQSRKDEETS VAMAGAMFDM 960 LDAWRSRMTV ATNRSDDKFS ITNCIKALDE IEGIEDWLYF AALDLFEDSN LRETFICLKG 1020 GTARLTWLQG KCVSPALTSF

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence

MSESKPQSDP VQNPRVTWEG CSVLLDINDG DRLVFARLSA GATLKIGNKT CSLQPLIGCP  60
FGSMFQVESG QEKPYLSRFT PSTEENNVQD EGKQESRDNR ALIDNNQAQS LTSEDIDALR  120
RQGATGNEIV EALIANSTTF DKKTQFSQEK YRIKKQKKYA PRVLLRRPFS RSICEAYFKK  180
YPARIGFLRV DALSLLLSMA NVTANSDVLV VDWVGGLLTG AVAERLGGTG SVCNTYLGGK  240
PHSMEIIRMF NFTNEICKRI LRCSLDDLCS VQSGTDEKAD QQETVRTVEI RSTEQTSVSV  300
SMEEVDLSTD NGVGDLLPEN DLSTVSKTCK APKAGDKASK ESMKLWRENG FSSLIIAAPE  360
QDPWSLVKHL LPLLSYSAPF AIYHQYLQLT NQNQNQNQPL SYGKPLFPAY LARQPLLFSS  420
FDHSNSSLDS AHSAFATPPL NQTREVKSVE AQTSGRQDVT GHGKVINHPL PGSEHEKGGK  480
HNSKAKGKKN AKSGTQKLDA DSPNGLNTTG NCRYDSSLGL LTKKFVNLIM EAKDGTLDLN  540
HTAEVLEVQK RRIYDITNVL EGIGLIEKTS KNHIRWKGSD DKALELDDQV TRLKAEVQRL  600
YVEECKLDNH IRERQESLRA LDEDVNYQKY LFMTEEDIMN LPCFQNQTVI SIKAPQASYI  660
EVPDPDKDIV FQQRQYKMII RSHNGPIDLR LLSEYQDNVK GLSGGSPELC SDEKASQMNS  720
SKIQLTPTMG DMEPEAGQPK QERSRTRWTP SLDKIFADLV VKQIQLGNRP NNVFDKKTWN  780
NIRDEFNRQT ELNFNNNQLR KHLDVLRTRF YNLKSAYDQN DFAGMEDSCC IGFDLWEDIG  840
AQPRPEPVKV KDCPIYEQLC TIFTDSSADG KYAQSSHFEG LDKAVGNDNG GLNSCPEGGS  900
AQPDNSSASR LPQNNSLPEQ LTKTTGERKR KRPSEAQSSL DQSRKDEETS VAMAGAMFDM  960
LDAWRSRMTV ATNRSDDKFS ITNCIKALDE IEGIEDWLYF AALDLFEDSN LRETFICLKG  1020
GTARLTWLQG KCVSPALTSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.2	2e-80	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OMO87406