PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87448
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family BBR-BPC
Protein Properties Length: 328aa    MW: 36244.3 Da    PI: 9.7053
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87448genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind382.85.7e-1172232824301
  GAGA_bind  24 lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqq.lse.p 117
                  +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+alaern+a+ erdn++++l+++ensla    s++p+g q+++g k++ + qq +++ p
   OMO87448  22 SMKQIMALMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAALAERNNAVAERDNAIANLQYRENSLAngnmSSCPPGFQMSRGMKHVPHQQQnIHHmP 121
                345****************************************************************9999999****************999976668* PP

  GAGA_bind 118 qledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke.kkakkkkkksekskkkvkkesader......................skaekksi 194
                ++++ +++ re++ ++alp++  ++ea ++++ k+++++k   + kka+k+ kk + ++++ +k    ++                      +k+++k +
   OMO87448 122 HISEAPYNSREMHPSDALPVTPGTSEAAKSRQGKRGKEGKAVASdKKASKPPKKVKRENEDLNKIMLGKSdewkggqdvgvggddhkkqtvaTKSDWKGQ 221
                *******************99988888888887777666544330333454444444444444443332267899************************* PP

  GAGA_bind 195 dlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                dl+ln+v +D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dls pvDLkd WAkHGt
   OMO87448 222 DLGLNQVVFDDSTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSVPVDLKDNWAKHGT 321
                **************************************************************************************************** PP

  GAGA_bind 295 nkfvtir 301
                n+++ti+
   OMO87448 322 NRYITIK 328
                ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MCSIVQFSEN LCLLQWLMHQ PSMKQIMALM AERDAAIQER NLALSEKKAA IAERDMAFLQ  60
RDAALAERNN AVAERDNAIA NLQYRENSLA NGNMSSCPPG FQMSRGMKHV PHQQQNIHHM  120
PHISEAPYNS REMHPSDALP VTPGTSEAAK SRQGKRGKEG KAVASDKKAS KPPKKVKREN  180
EDLNKIMLGK SDEWKGGQDV GVGGDDHKKQ TVATKSDWKG QDLGLNQVVF DDSTMPPPVC  240
SCTGVLRQCY KWGNGGWQSS CCTTTLSMYP LPAVPNKRHA RIGGRKMSGS AFNKLLSRLA  300
AEGHDLSVPV DLKDNWAKHG TNRYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175KKASKPPKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-138BBR-BPC family protein