PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87461
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 945aa    MW: 103990 Da    PI: 5.2082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87461genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24150251199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l+v
  OMO87461 150 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLMV 246
               99*********************999*****954444.4.38************************************************..4577778** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +v+r+
  OMO87461 247 GVRRA 251
               ***97 PP
2Auxin_resp115.25.9e-38276359183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPra++seFv++++k++k++  ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
    OMO87461 276 AAHAAANRSPFTIFYNPRACPSEFVIPMAKYRKSVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGMSDLDPLRWPGSKWRNLQ 359
                 79********************************988*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    
MGSVVEEKIK SGALVNGGAA QATLLEEMKL LKEMQDQSGA RKTINSELWH ACAGPLVSLP  60
QVGSLVYYFP QGHSEQVAVS TKRMATSQIP NYPSLPSQLM CQVHNVTLHA DRDTDEIYAQ  120
MSLQPVNSER DVFPIPDFGL KSSKHPTEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD  180
YTMQPPTQEL VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS LFVGSKRLRA GDSVLFIRDE  240
KSQLMVGVRR ANRQQTTLPS SVLSADSMHI GVLAAAAHAA ANRSPFTIFY NPRACPSEFV  300
IPMAKYRKSV FGTQVSVGMR FGMMFETEES GKRRYMGTIV GMSDLDPLRW PGSKWRNLQV  360
EWDEPGCNDK QNRVSAWEIE TPESLFIFPS LTSGLKRPLH PGILGAESEW GSLIKRPLLQ  420
FPENGNGNLP YPISNLCSEQ LMKMMLKPQL VNHPGIYAST LHQISAAKGS PLEEVKNLQP  480
TTYQKPLLIE NQNHSQLVPD QSDPISSNLP KVNANGNLHP ANKVESQTQT RCNNEKLKVE  540
PEHSTDQFSQ LTSTSECHEE KLAASAISPS SILNQLPFSN QNQVQYQLQN NPWPIPSQLD  600
SSLLQAHQMQ VSQADINNLS SFLPLLDTDE WTSHLSTSCQ PLAGIYRAPG PIPMVGLQDS  660
SAVFTEASNP SLTTGGQDTW DNQLNNCRFL PQADQLTSFT QQDPCCLNSG GVKDLSDDSN  720
NQSGIYSCLN IDAGNGGSTV IDPSVSSAIL DEFCSLKEAD FQNPSDCLVG NFSSSQDVQS  780
QITSASLADS QAFSRQDLPD SSGGTSSSNV DFDESGLLQN NSWQQMAPRV RTYTKVQKAG  840
SVGRSIDVTS YKNYDELISA IECMFGLKGL LNDPRGSGWK LVYVDYENDV LLVGDDPWEE  900
FVGCVRCIRI LSPTEVQQMS EEGMKLLNSA TVQGINGSNS EGCNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein