PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87487

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SRS

Protein Properties

Length: 312aa MW: 34600 Da PI: 7.9221

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87487	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.2	7.3e-71	90	248	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........kskkqsalsstklssa 94 r+g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++ +++++++++ +++ + +l++t+ls + OMO87487 90 RQGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQHQPQDQQQQQQQFRgenpkrqrENQGAPSLACTRLSPS 190 7899***************************************************99988877633333333222334444223344555666666555 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le ++P+evss+avfrcv+vs+vdd++ee+aYqtav+i+GhvfkGiLydqG+e+ OMO87487 191 --TSGLELGQFPPEVSSPAVFRCVKVSAVDDADEEFAYQTAVNIAGHVFKGILYDQGPES 248 ..56688999**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MAGFFYLGGR EGGNNNKQEG EDKEESLYLY RNNNNEEIYN KGFEIWPQYY YQQQQNANNY 60 TFGAGPSRRT TGFNLSDESS SRSAGFTVMR QGGMNCQDCG NQAKKDCSHL RCRTCCKSRG 120 FQCQTHVKST WVPAAKRRER QQQLAALQQQ QQHQPQDQQQ QQQQFRGENP KRQRENQGAP 180 SLACTRLSPS TSGLELGQFP PEVSSPAVFR CVKVSAVDDA DEEFAYQTAV NIAGHVFKGI 240 LYDQGPESRY TTSGGETSQP LNLITAATTA ATTATTPPTS SNPGTNMLDP SLYPAPLNAF 300 IAGTQFFPPP RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	6e-89	SRS family protein

Link Out ? help Back to Top
Ensembl	OMO87487