PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87490

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26972.9 Da PI: 9.8014

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87490	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.2e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n +nrqvt+skRrng++KKA+EL vLCda+v++i+fs++gkl+e++s OMO87490 9 KPIDNPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSQSGKLHEFIS 59 68***********************************************86 PP
2	K-box	95.5	8.6e-32	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++Ls++eLq Leq+++++ k iR++K++ + +qi++++kk ++++e++k L ++l+ OMO87490 71 YQKTLGVDLWQSQYEKMQEQLRKLKDVNRNLRKEIRQRMGDCLNELSFEELQGLEQEMDNAAKLIRERKYKSIGNQIDTSRKKCRNVEEIHKGLLHELD 169 7899999***************************************************************************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MARGKIQIKP IDNPTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFSQ SGKLHEFISP 60 STTTKEIIDL YQKTLGVDLW QSQYEKMQEQ LRKLKDVNRN LRKEIRQRMG DCLNELSFEE 120 LQGLEQEMDN AAKLIRERKY KSIGNQIDTS RKKCRNVEEI HKGLLHELDA IKEDPYGLVD 180 NGGDYDAIIG YQHGGPRIFA LRLQPTHSTV NPITPRRNPQ LPSPEEFPKI ARAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-103	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO87490