PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87505
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 252aa    MW: 27515.4 Da    PI: 6.5974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87505genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-194291255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  OMO87505 42 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 91
              69****999.**********8...3.35************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MSTSVMGNSS YGEKKPMKKP AQASSRKGCM RGKGGPENAM CTYKGVRQRT WGKWVAEIRE  60
PNRGARLWLG TFDTSHEAAM AYDAAARKLY GSEAKLNLPE LCATGGSQYH HHHHPAANSN  120
VAPIGNNVNQ LHHHQNVNNT NSGTSSSNST TSMMRATNDV TSVYNDVSSS VMSSFPNENM  180
NNSQGNLVEN NGKYDEGFWE NMSVNLPVLD ESIWAEAAMS LDFPVMDIEP GSFGSTLVDT  240
TGWDALQSPW CM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-49ERF family protein