PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87541
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 428aa    MW: 46825.8 Da    PI: 7.813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87541genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-053173551255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  OMO87541 317 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 355
               7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MESENVHHHH HQHQLQDQLV VASSSSSSSL PSYGVSSTHS WSTPSTPSFT LNNSDFNPSY  60
NNGAMLNSEG SFTTSHDLHL SKIKDELSES LTKFTEMLTQ NSNDVVQGSP PPHHHHHQLQ  120
QQKDLHDLSE KLLLKTISSG FPMFSAGEFY SSAAQNCSIP GTTGNLPSRG SFSQIYPSIN  180
ISNLNQAAAN NPSNSFDMNL EALDLLSSAR FSRSSSFNSH PSNSHDHFDH LGIYKDSPYN  240
NFGLHHYHQH MQQSNQRPTY NSSPSKISTT SFPSSTEITE AKRASISPAE PKATAAAGAA  300
KKSRLDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET  360
LSVPYMKSSR NKTCRPKQGG SIMEDGKEEA KRDLRSRGLC LVPLSCMSYV TNDSGGGIWP  420
PPNFTGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-68bHLH family protein