PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87629

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 511aa MW: 53087.6 Da PI: 9.1913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87629	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO87629 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ OMO87629 146 WKCERCSKKYAVQSDWKAHMKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MGELENSSSM AVSTASGEAS ASSSGNQIQG TQLVAEGGPP KKKRNLPGMP DPDAEVIALS 60 PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RISKEIRKRV YVCPEPSCVH 120 HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTI 180 FSRRDSFITH RAFCDALAEE SARAQTLTVS NTEGNMNVNG NGNGKSIVGA GGGGGAATSP 240 PPQPLTPSTT SVVSPGLSIQ SSEMPENTMG LSPPITPAAT SAPSTSSSNV FASIFAPQTQ 300 QSKMPAPASS ILQSAAAPLE RTSLSLSSPL YLSNNGSSIF TGPEHDHCHY APSAQPAMSA 360 TALLQKAAQM GAAASNPSLL RGLGLAVSSS PSAAGPDPNV KAESSSVAAG LGLGLPLNGS 420 SSGLNTHHHH HHPMIGSSSL FGNKPTTLDL LGLGIADHGG ASPNGLSAFL TSFGGGFNVG 480 AATSSYPAGG NSPRDTWEGA AERKPNGPAM L

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MGELENSSSM AVSTASGEAS ASSSGNQIQG TQLVAEGGPP KKKRNLPGMP DPDAEVIALS  60
PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RISKEIRKRV YVCPEPSCVH  120
HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTI  180
FSRRDSFITH RAFCDALAEE SARAQTLTVS NTEGNMNVNG NGNGKSIVGA GGGGGAATSP  240
PPQPLTPSTT SVVSPGLSIQ SSEMPENTMG LSPPITPAAT SAPSTSSSNV FASIFAPQTQ  300
QSKMPAPASS ILQSAAAPLE RTSLSLSSPL YLSNNGSSIF TGPEHDHCHY APSAQPAMSA  360
TALLQKAAQM GAAASNPSLL RGLGLAVSSS PSAAGPDPNV KAESSSVAAG LGLGLPLNGS  420
SSGLNTHHHH HHPMIGSSSL FGNKPTTLDL LGLGIADHGG ASPNGLSAFL TSFGGGFNVG  480
AATSSYPAGG NSPRDTWEGA AERKPNGPAM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO87629