PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87815

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

BBR-BPC

Protein Properties

Length: 674aa MW: 71714.8 Da PI: 9.9325

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87815	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	249.5	2.2e-76	425	674	58	301
GAGA_bind 58 maflqrdkalaernkalverdnkllalllvenslasalpv.....gvqvlsgtksidslqqlsepqledsave...lreeeklealpieeaaeeakekkk 149 +a+ d l+++ a+ ++++ +n+ +sa+p+ ++ + +g +s++ q +ep l ++ ++ +e ++ ++++++++ ++k OMO87815 425 IAYGLTDVLLHNQITAMQMGSYSNKNMMPETNTGSSASPFswfygNYMTKPGLSSLQRAQIGHEPGLLVAPIRsisAPTTESENNDDLRSKTTKVGKQKP 524 6777888888887777766666677777777777766665222213566788888998888888544433333212444555566666777777777777 PP GAGA_bind 150 kkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 + k +++ k+ + k++kkk++++kk + + + +++k+ek+++++ l+g ++D s++P P CsCtG+ r+CYkWG+GGWqS+CCtt+iS +PLP+s++ OMO87815 525 SVKDSNPVASKVLRPKQPKKKPSTPKKAKGPIT--PEAKREKRNLNVDLDGTNFDFSGVPSPFCSCTGVARVCYKWGAGGWQSSCCTTNISEHPLPMSST 622 778889999999999999998877755554444..79************************************************************* PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 r+gaR+agrKmS+ga+ klL +LaaeG+dls+pvDLk+hWA+HGtnkfvti+ OMO87815 623 RPGARMAGRKMSNGAYLKLLLRLAAEGHDLSHPVDLKHHWARHGTNKFVTIK 674 *************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MDSPETSSSR TISVNSSASD GSSISTSTIS QKVLGVLHLA VSLGLILAMD KYLKKAFVAA 60 AIKFPSALFG MFCIFSVLVI LDTTIPAAAK GLMDFFEPAL MFIQRWLPLF YVPALVVLPL 120 SVRDIPAASG LKICFIIAGG WLASLCVAGY TAIAVRNIVK TEMTDAEPMA KPSPFSPLEF 180 WAWGGIFVAS FVSALFYPTA LGTTARTCLP FLLASTVLGY MVGSGLPAGV KQILHPIICC 240 ALSADLAAVA FGYISKSGVD AVLGDYLTKV PSNPGAGDIL MGFLGSVILS FAFSMFKQRK 300 LVKRHAAEIF ISIILSSLFS LYSTALIGRL VGLEPSLTIS ILPRCITVAL ALSIVSFFEG 360 ANTSLTAAAV VVTGLIGANF VQATLDKLRF RDPIARGIAT ASSAHGLGTA ALAAKEPEAL 420 PFCAIAYGLT DVLLHNQITA MQMGSYSNKN MMPETNTGSS ASPFSWFYGN YMTKPGLSSL 480 QRAQIGHEPG LLVAPIRSIS APTTESENND DLRSKTTKVG KQKPSVKDSN PVASKVLRPK 540 QPKKKPSTPK KAKGPITPEA KREKRNLNVD LDGTNFDFSG VPSPFCSCTG VARVCYKWGA 600 GGWQSSCCTT NISEHPLPMS STRPGARMAG RKMSNGAYLK LLLRLAAEGH DLSHPVDLKH 660 HWARHGTNKF VTIK

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MDSPETSSSR TISVNSSASD GSSISTSTIS QKVLGVLHLA VSLGLILAMD KYLKKAFVAA  60
AIKFPSALFG MFCIFSVLVI LDTTIPAAAK GLMDFFEPAL MFIQRWLPLF YVPALVVLPL  120
SVRDIPAASG LKICFIIAGG WLASLCVAGY TAIAVRNIVK TEMTDAEPMA KPSPFSPLEF  180
WAWGGIFVAS FVSALFYPTA LGTTARTCLP FLLASTVLGY MVGSGLPAGV KQILHPIICC  240
ALSADLAAVA FGYISKSGVD AVLGDYLTKV PSNPGAGDIL MGFLGSVILS FAFSMFKQRK  300
LVKRHAAEIF ISIILSSLFS LYSTALIGRL VGLEPSLTIS ILPRCITVAL ALSIVSFFEG  360
ANTSLTAAAV VVTGLIGANF VQATLDKLRF RDPIARGIAT ASSAHGLGTA ALAAKEPEAL  420
PFCAIAYGLT DVLLHNQITA MQMGSYSNKN MMPETNTGSS ASPFSWFYGN YMTKPGLSSL  480
QRAQIGHEPG LLVAPIRSIS APTTESENND DLRSKTTKVG KQKPSVKDSN PVASKVLRPK  540
QPKKKPSTPK KAKGPITPEA KREKRNLNVD LDGTNFDFSG VPSPFCSCTG VARVCYKWGA  600
GGWQSSCCTT NISEHPLPMS STRPGARMAG RKMSNGAYLK LLLRLAAEGH DLSHPVDLKH  660
HWARHGTNKF VTIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.1	6e-65	BBR-BPC family protein

Link Out ? help Back to Top
Ensembl	OMO87815