PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87842

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 290aa MW: 32181 Da PI: 8.0522

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87842	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.1e-33	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl OMO87842 31 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 85 79****************************************************8 PP
2	Myb_DNA-binding	66.2	6e-21	33	84	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++++vdav++lGg+ t+k++ r mg kg+tl+++ks++qky+ OMO87842 33 RLRWTADLHDRFVDAVTKLGGPdkaTPKSVLRVMGlKGLTLYHLKSHLQKYR 84 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MERLSYGGGC GGGGGGSYGY ENGVVMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKATPK 60 SVLRVMGLKG LTLYHLKSHL QKYRLGQQGR KQNAADQNKE NGGNSYVQFS NHSPGSISNS 120 PRADNGQIPM VEAIKNQLEV QKTLQQQLEV QKKLQMRIEA QGKYLQAILE KAQKSLSFDM 180 NCEGNMEETR SQLSNFNLAL SNLMENVNEA AADRKSNIVE MNNVDVFKKA DCSAFQNYGV 240 GGELREENND VKLKVEGDSI NFDLNSSKES YEFVAVNGNE LQSHLFSYKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-75	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO87842