PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87944

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 1304aa MW: 150386 Da PI: 8.8644

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87944	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.9	7.8e-13	1045	1131	12	99
HTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ lp +fa+ + ++ + + + +g+sW v++ ++ ++++++++GWkeFv++n L g +vF+++g +f++++ +f + OMO87944 1045 CNDDWKLPPQFAKGFqrclvnKL----PEDRFILICDGKSWAVEV-VNVAKDEVYFREGWKEFVHDNSLGIGGLIVFEYQG--DFKFNLDIFGR 1131 55667789999988888665333....3344444458******.7999999***********************987..66668888765 PP
2	B3	46.7	5.6e-15	1207	1299	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 fkv++++ + + l + +kf++++ +++ ++l+ s ++W+vk+ + ++++ + +GW++Fv++n Lke+D+++Fkl+++++ +l v++ r OMO87944 1207 FKVTMQPTYVQGTYLNVTNKFTKKIRLSHG-ANNIKLKV-SDKTWDVKI--SDYPRHGKIHSGWRKFVDDNSLKENDICLFKLINSQDLTLDVTISR 1299 466677777777779********76653.34777665.77***..99999999***********************9999999999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1304 aa Download sequence
MKEVKIDRMR RRIGFANGIC VEPEGLSGGL CLWWKDDVDV KVLKISKNLI HVRVRNKEKL 60 SWFLTCIYAP PVLENRLEFW NVIREVAASV SGAWIIGGDF NEVMTSDEKE RGLPLENRRV 120 LPFHDVIFDC GLMDMGFKGQ RFTWQNRREA NIRERLDRAF INVEWRAKFS VAQCFNLPAV 180 GSEHSPIFIA LDPDEKKSSR IFRFESQWTT SDECKTVIEN EWQGTVSDSW LMEVIRRFKK 240 CKKALTTWSK KSFPNNRKEI DTLMKELAQI QDNSHSEEEW VKAELIIAKL EGIWAREEMF 300 WNQRSRVKWL KYGNWVEKED DVERLLLNHY ASLFRSTGAR EWREALDHVD KVVTDDMNEM 360 LTREVTEEEI KSAAFDMGAL KAPGPDGFSG IFYQKYWEVV GDLVINAVKE FFRTGFLPQK 420 LNKTNIVLIP KVDNPKEVGQ FRPISLCNFM YKVLSKVLVN RMKGILTDII TPSQCAFVPQ 480 RQIQDNIFIA HEAFHHLKLK KSKKDVEMGL KLDMNKAYDR VEWDFLKEVM LKMGFDNDSL 540 FFLKAEPENC RRMAEILSQY CRASGQQVNF QKSSLFFNSN CPDHVKEECG NIFNIQTSGN 600 PGKYLGLPSV WGRSKEEALG FLKDRMIKKI QGWKKGLLSQ AGFCSKLESI VAKFWWGDNE 660 DKRKIRWQSW KKLTRAKKVG GLGFRELYFF NKVLIAKQSW RILQNPNAFW VYSGENVDLW 720 DQAWIPGLKG EKLGYKPDDD EVIPRRVKDI MDVPQQKWRL DLIAHRISDM EASAIEDTPI 780 NETGICKEKV ETVKHLLLLC PWTTPVWFEG CASMRIDRGA ITNFADWWMN CFEDTRLNEE 840 DLMSLAARAA FITWYIWKGR NEVHFNGKEP DAKGTLIRAE KAWQEYHSAN STEKKKILTR 900 TQKREPWSPP ANDIIKINVD GAYDCKTGEA AVGVIARGAN GMVVDGLGKK VRASSCDMAE 960 VMAVREGIRL AKEKRWERVI LETDSQEALT DCIKDDSVCA WEVKPLVQDI KVWSRSIREL 1020 EMIWVPRSAN GAAHWVAVST RKGMCNDDWK LPPQFAKGFQ RCLVNKLPED RFILICDGKS 1080 WAVEVVNVAK DEVYFREGWK EFVHDNSLGI GGLIVFEYQG DFKFNLDIFG RQCSRKGVSP 1140 DIWEKYNVPQ KGEKPTINGG GQATSELSQQ EGQPTMGGGG QGTSETQETN LAALKKSKKF 1200 KSKSLNFKVT MQPTYVQGTY LNVTNKFTKK IRLSHGANNI KLKVSDKTWD VKISDYPRHG 1260 KIHSGWRKFV DDNSLKENDI CLFKLINSQD LTLDVTISRF SQFL

Sequence ? help Back to Top

Protein Sequence Length: 1304 aa Download sequence

MKEVKIDRMR RRIGFANGIC VEPEGLSGGL CLWWKDDVDV KVLKISKNLI HVRVRNKEKL  60
SWFLTCIYAP PVLENRLEFW NVIREVAASV SGAWIIGGDF NEVMTSDEKE RGLPLENRRV  120
LPFHDVIFDC GLMDMGFKGQ RFTWQNRREA NIRERLDRAF INVEWRAKFS VAQCFNLPAV  180
GSEHSPIFIA LDPDEKKSSR IFRFESQWTT SDECKTVIEN EWQGTVSDSW LMEVIRRFKK  240
CKKALTTWSK KSFPNNRKEI DTLMKELAQI QDNSHSEEEW VKAELIIAKL EGIWAREEMF  300
WNQRSRVKWL KYGNWVEKED DVERLLLNHY ASLFRSTGAR EWREALDHVD KVVTDDMNEM  360
LTREVTEEEI KSAAFDMGAL KAPGPDGFSG IFYQKYWEVV GDLVINAVKE FFRTGFLPQK  420
LNKTNIVLIP KVDNPKEVGQ FRPISLCNFM YKVLSKVLVN RMKGILTDII TPSQCAFVPQ  480
RQIQDNIFIA HEAFHHLKLK KSKKDVEMGL KLDMNKAYDR VEWDFLKEVM LKMGFDNDSL  540
FFLKAEPENC RRMAEILSQY CRASGQQVNF QKSSLFFNSN CPDHVKEECG NIFNIQTSGN  600
PGKYLGLPSV WGRSKEEALG FLKDRMIKKI QGWKKGLLSQ AGFCSKLESI VAKFWWGDNE  660
DKRKIRWQSW KKLTRAKKVG GLGFRELYFF NKVLIAKQSW RILQNPNAFW VYSGENVDLW  720
DQAWIPGLKG EKLGYKPDDD EVIPRRVKDI MDVPQQKWRL DLIAHRISDM EASAIEDTPI  780
NETGICKEKV ETVKHLLLLC PWTTPVWFEG CASMRIDRGA ITNFADWWMN CFEDTRLNEE  840
DLMSLAARAA FITWYIWKGR NEVHFNGKEP DAKGTLIRAE KAWQEYHSAN STEKKKILTR  900
TQKREPWSPP ANDIIKINVD GAYDCKTGEA AVGVIARGAN GMVVDGLGKK VRASSCDMAE  960
VMAVREGIRL AKEKRWERVI LETDSQEALT DCIKDDSVCA WEVKPLVQDI KVWSRSIREL  1020
EMIWVPRSAN GAAHWVAVST RKGMCNDDWK LPPQFAKGFQ RCLVNKLPED RFILICDGKS  1080
WAVEVVNVAK DEVYFREGWK EFVHDNSLGI GGLIVFEYQG DFKFNLDIFG RQCSRKGVSP  1140
DIWEKYNVPQ KGEKPTINGG GQATSELSQQ EGQPTMGGGG QGTSETQETN LAALKKSKKF  1200
KSKSLNFKVT MQPTYVQGTY LNVTNKFTKK IRLSHGANNI KLKVSDKTWD VKISDYPRHG  1260
KIHSGWRKFV DDNSLKENDI CLFKLINSQD LTLDVTISRF SQFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	3e-10	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO87944