PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87951

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 624aa MW: 68927.4 Da PI: 5.3055

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87951	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.1	3e-07	599	624	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek++sl++l++yFs+++kdAAk++g OMO87951 599 AEKNVSLSVLQQYFSGSLKDAAKSIG 624 589*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MEYPFSSKEK GNGYWVPPRA QMEVGEQLGG NTRNSISEDP FNFSELMNFD TYAGWCNSPV 60 ATDQMFASFG LSSFPSLPYA SFDSLNNTGQ SSGTFFEAGD ASNVMDSSYN CVDRAVFPQT 120 GAHTGNPLAT ADTDELGLRQ TNGCSRQNNT SELAYSLVSR PIGLSLDEKM LRALSLFKDS 180 SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DEMLSGYREV SRTYSFSAEL KPGSIPGLPG 240 RVFTSRVPEW TSNVIHYSKG EYLRVGHALN HKVRGSIALP VFQPPEMSCC AVLELVTMKE 300 KPNFDSEMEN VCIALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA VCHAHRLPLA 360 LTWIPCNYAE EAIDEIIKVR VREGNKGRDG KCVVCIEDTA CYVNDREMQD FVHACAEHYL 420 EEGQGIAGKA LQSNHPFFSA DVKTYDISDY PLVHHARKFN LNAAVAIRLR STYTGDDDYI 480 LEFFLPINMK GSSEQQLLLN NLSGTMQRVC TSLRTVSDAE LVEGSKVEFQ REPVQNFPPM 540 SMSRRSSETA LSADSDMNSN ERTPLNVSNS QGDRKEADGL PEQAMSGPRR PTEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIG

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MEYPFSSKEK GNGYWVPPRA QMEVGEQLGG NTRNSISEDP FNFSELMNFD TYAGWCNSPV  60
ATDQMFASFG LSSFPSLPYA SFDSLNNTGQ SSGTFFEAGD ASNVMDSSYN CVDRAVFPQT  120
GAHTGNPLAT ADTDELGLRQ TNGCSRQNNT SELAYSLVSR PIGLSLDEKM LRALSLFKDS  180
SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DEMLSGYREV SRTYSFSAEL KPGSIPGLPG  240
RVFTSRVPEW TSNVIHYSKG EYLRVGHALN HKVRGSIALP VFQPPEMSCC AVLELVTMKE  300
KPNFDSEMEN VCIALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA VCHAHRLPLA  360
LTWIPCNYAE EAIDEIIKVR VREGNKGRDG KCVVCIEDTA CYVNDREMQD FVHACAEHYL  420
EEGQGIAGKA LQSNHPFFSA DVKTYDISDY PLVHHARKFN LNAAVAIRLR STYTGDDDYI  480
LEFFLPINMK GSSEQQLLLN NLSGTMQRVC TSLRTVSDAE LVEGSKVEFQ REPVQNFPPM  540
SMSRRSSETA LSADSDMNSN ERTPLNVSNS QGDRKEADGL PEQAMSGPRR PTEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OMO87951