PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87963
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Nin-like
Protein Properties Length: 398aa    MW: 43140.1 Da    PI: 4.6002
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87963genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.49.1e-1621452852
    RWP-RK 28 clTvLKriCRqyGIkRWPhRkiksl 52
              c+T+LKriCRq+GI+RWP+Rki+++
  OMO87963 21 CPTTLKRICRQHGISRWPSRKINKV 45
              ***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MENSSNQVMI VMCFGSIQVF CPTTLKRICR QHGISRWPSR KINKVNRSLK KIQTVLDSVQ  60
GVEGGLKFDP ATGGFVAAGT IIKELDTRKT LFSEKNLPDR VTEPVNQDNS SAALASCPDG  120
ENSVVKLEED ECSFGGNDIG DPRSALIQST CQEVKKYITP QIDCTEHSNS VGLDTGLLHA  180
ASIGTAPWAC PENTTTGSYL PDGGDRWGLN KGTLKIEDSD CQFVSGSSSS LAAADEMDTQ  240
MEGCDGIAEH NHQPTTSSMT DSSNGYGSML NGSSSSSQSF EEAKNSKVKT VCVDSNSKIT  300
VKATYKEDTV RFKFDPSAGC FQLYEEVAKR FKIPNGTFQL KYLDDEEEWV MLVSDSDLQE  360
CLEILEYVGT RSVKFQVRDI PCVMGSSGSS NCFLAGGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.18e-41Nin-like family protein