PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87965
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 215aa    MW: 24872.7 Da    PI: 6.2752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87965genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.16.3e-186111391
       NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleev.ikev..diykvePwdLpk...kvkaeekewyfFskrdkkya........tgkrk...nratksgyWka 85 
               +G+ F+P+deel+ e+L+++ ++g  ++ +   i+++  di++++PwdLp    +v+++++ wyfF +   ky+         gkrk   nratk+g Wk 
  OMO87965   6 RGYGFRPSDEELI-EHLRNRaLSGIGCDYSVQeITDLgvDICNWDPWDLPGltnMVTSTDRTWYFFYPITYKYPeckrrkinDGKRKpliNRATKNGKWKP 105
               79***********.55665515665655533347775559*********944557777899************94444433322232222566******** PP

       NAM  86 tgkdke 91 
               +g  ++
  OMO87965 106 SGDPRK 111
               **9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MNKFKRGYGF RPSDEELIEH LRNRALSGIG CDYSVQEITD LGVDICNWDP WDLPGLTNMV  60
TSTDRTWYFF YPITYKYPEC KRRKINDGKR KPLINRATKN GKWKPSGDPR KNKYVLGKLM  120
IQSEPITNKS SSKGQQLPPQ VHIDFHDQLD DWVQNQSSIS EQPNEFASSS PVDNCTTYPE  180
EIRSNRDNFV NDYQVSQVQL PSNLENYVAD DAVLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-18NAC family protein