PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88210

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 185aa MW: 21867.5 Da PI: 8.649

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88210	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.6e-21	23	84	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ OMO88210 23 KCGRWNPTTEQVKVLTDLFRSgLRTPSTDQIQKISTQLsfygKIESKNVFYWFQNHKARERQ 84 568***************99************************************97 PP
2	Wus_type_Homeobox	114.8	4.4e-37	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ OMO88210 23 KCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 86 678***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MEEGFSGFCI KGNLRNNNGS GTKCGRWNPT TEQVKVLTDL FRSGLRTPST DQIQKISTQL 60 SFYGKIESKN VFYWFQNHKA RERQKRRKVS MDENDFISCT RDNKISASKR FFEVNNLHHE 120 IKEYNNINHQ PHERVIETLQ LFPLNSFDDQ NDLHNQQQEK LRFHAGDCRE PIMDHPPLDL 180 RLSFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	1e-60	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO88210