PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88346

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 201aa MW: 22469.6 Da PI: 8.5691

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88346	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.1	4.7e-22	13	62	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l+ + OMO88346 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQCRE 62 7*********************************************9854 PP
2	DUF260	60.4	5e-19	84	137	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la +++e OMO88346 84 KELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAE 137 6789*********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MKESGRKHGT LSPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQC 60 REKYPPISTC LLQGREKKQI MSDKELPEHQ RSDAVSSMVY EANARVRDPV YGCVGAISSL 120 QQQIDSLQTQ LAIAQAEVVH MRMRQFVSTS PNNNNNNPDS SSPQNLPHGS ASSKFMPSQA 180 KSFYCMDMVD QPNMAESLWS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-59	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO88346