PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO88556
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 388aa    MW: 43633.8 Da    PI: 8.9471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO88556genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026128151123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               ++C++Cg+sF+  +  + H  + H
  OMO88556 128 FVCKKCGESFRKLEAIEAHHFSrH 151
               89**************99987766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MAAIWFSSLK RSLKLCKAEL SDIVQPNPNC NDEPRKPVLS RLLSSKSRRS LRDDHGAIQG  60
RRSTQEAESM EISHILDPIT ESSVSDPNIR LRPRDRLYSG GGGRRSFSCS RNMVSKPRRS  120
LDAEFRGFVC KKCGESFRKL EAIEAHHFSR HAVTPLSEED NSRKTVEMIF GINNLMESES  180
SIFGHEIERV LRVDHMQSSL TRFEDYRAMV KLKASMKYPR CLADGNELLR FYGTTVACSI  240
GTKTTSTGLC SSDKCGLCRI LRHGFSSTKE EYSNGFRGVF TFSTSKSAFE FIKVDHGEKR  300
DLIRKALILC RVIGGRVHKP LEKDFHEMAT AQSSFDSVAA YADDITDSNI EELYSLNPRV  360
LLPCFVVICN PSMPRSVLQP ISTSHIGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.12e-77C2H2 family protein