PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO88571
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 164aa    MW: 17749.7 Da    PI: 4.7881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO88571genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-161565155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
              ++ykG+r+++ +g+Wv+eIr+p   g +  r +lg++ t+e+Aa a++ a  +l+ 
  OMO88571 15 KKYKGIRRRR-WGKWVSEIRVP---G-SqERLWLGSYSTPEGAAIAHDIAFYCLRR 65
              59*****777.**********8...4.35*********************999885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MSNTSAVEES FGNGKKYKGI RRRRWGKWVS EIRVPGSQER LWLGSYSTPE GAAIAHDIAF  60
YCLRRPSSLN LLNFPSMLPP NVNVNMSPKS VQKAASDAGM AVDAQLMVVG GGGGNEVKAN  120
DDQNGVVTVG LETDYSWEND SSSSWEGSVG KETEALSISV EDYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.16e-50ERF family protein